PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19703_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 410aa    MW: 45684.4 Da    PI: 6.07
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19703_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH413.1e-13103125426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C ++++tGtCk+G++CkF+H+
  Neem_19703_f_1 103 EDCAYYMKTGTCKFGSNCKFNHP 125
                     89********************8 PP

2zf-CCCH39.41e-12160184226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++r+G CkyG++C+F+H+
  Neem_19703_f_1 160 GEKECPYYMRNGSCKYGANCRFNHP 184
                     6789********************9 PP

3zf-CCCH28.33e-09295321127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++f++tG Cky ++Ck++H++
  Neem_19703_f_1 295 PGQPECSYFLKTGDCKYKSNCKYHHPK 321
                     5789*********************96 PP

4zf-CCCH36.96.3e-12343366326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C++++r+G+Ck+G+ CkF H+
  Neem_19703_f_1 343 QNICSYYSRYGICKFGPACKFDHP 366
                     679********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.23E-798127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.11299127IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-699126IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-11103125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5105124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591159186IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6160185IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10160184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6161185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5164183IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333294322IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6338366IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84340368IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9343366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4345365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MELSETIPVP SLHHENPKLE LGLQSSSPKS DLDPAPSDLN HATELEDELQ NLDLREMEER  60
YSSKEEESES DDNNKIKSEV QRENENGNQI RKRYPYPVRP EAEDCAYYMK TGTCKFGSNC  120
KFNHPIRRKN QATKEKVRER EESAERPAQS QSQSQIECKG EKECPYYMRN GSCKYGANCR  180
FNHPDPTAVG ISDSPSGYAN GGSLSSKAAS QASLGSWSSP RALNETSPFV PMMFSPSQGV  240
PSQNSEWNGY QAPLYPPERS MQSSPTYVMN NPALETNVYT NHQPQMLVDE FPERPGQPEC  300
SYFLKTGDCK YKSNCKYHHP KNRISKSPPC ALSDKGLPLR PDQNICSYYS RYGICKFGPA  360
CKFDHPINTA ASSTECGPDP PTSFGNSATR QETVVGGTGN GSDNKIQQPV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440011.10.0hypothetical protein CICLE_v10019979mg
SwissprotQ9STM41e-122C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLV4TTN00.0V4TTN0_9R
STRINGGLYMA17G13580.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-114C3H family protein